rs254054208 SNP Detail

Summary

• ID
  rs254054208
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115739545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGGCAG ATAGTTTCTG
  TGTCCACCGG CCACTCTCTG AAAGTGCTGA ATAGCCATTC CCTTGTCTAT TCACAGCAGC
  GAAGCAGACT GAATGAACAG TTTTTTATTG GATTGGATTC TATCACCCTC CCCCCAGTGC
  TGTGAATAGA ATGTAGGCCT CCTAGGGTAC TGCTGAGCCA CACCCTGAGT CTAGCACCTC
  W
  CTGGTGGGTG CTGGGCAAGA GCTCTAAGGC TGAGTCAAGT CTCCAGCTCC TGAGAAGTCA
  TTCTTTTTCA AAACAAAGTC TCACTATGTA GCTGTGGGTG GAAGTATTTT GGATACCATG
  CTAGCCTCCA ACTCACAGAG ATTCTCCTGT CTCTGTGGCT GTCTCTCTGT CTCTCAAGGG
  CTGGGATTAA AGGTGTGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369759754	MGP_WTSI_6_115712602	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	A	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254054208					SNP	T	T	T	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	A	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	A	T	T	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369759754	MGP_WTSI_6_115712602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115739545 () rs orientation: forward

Symbol	Name	Function Class
Rr637046	regulatory region 637046	230 bp distal
Rr637047	regulatory region 637047	within coordinates
Rr637048	regulatory region 637048	1390 bp proximal
Tmem40	transmembrane protein 40	174 bp upstream
Tssr58324	transcription start site region 58324	286 bp downstream
Tssr62532	transcription start site region 62532	240 bp upstream
Tssr62533	transcription start site region 62533	204 bp upstream