rs254040623 SNP Detail

Summary

• ID
  rs254040623
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87344870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA GATCCATGCA GGCCCTGCGC
  T
  CGCTGCATCA GTCTCTGTGA GTCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320833452	CHEV_3_87241485	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254040623					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87344870 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	Intron
Rr397756	regulatory region 397756	1662 bp downstream
Rr579488	regulatory region 579488	1668 bp distal
Tssr29807	transcription start site region 29807	1776 bp downstream
Tssr29808	transcription start site region 29808	1744 bp downstream
Tssr29809	transcription start site region 29809	1734 bp downstream