rs254015741 SNP Detail

Summary

• ID
  rs254015741
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97943763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA ATAAGAAGGC ACCCTTTGCG
  W
  TTCTTCTTGG TTGTCCCCTC CCACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320844160	CHEV_3_97840370	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254015741					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97943763 () rs orientation: forward

Symbol	Name	Function Class
Gm42819	predicted gene 42819	640 bp downstream
Notch2	notch 2	Intron
Rr581616	regulatory region 581616	1029 bp distal
Rr581617	regulatory region 581617	within coordinates
Rr581618	regulatory region 581618	561 bp proximal
Rr581619	regulatory region 581619	1880 bp proximal
Tssr30815	transcription start site region 30815	992 bp upstream