rs254013672 SNP Detail

Summary

• ID
  rs254013672
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCTATAG AAATATTATT
  TTCAGTGTTT AGTTCTTTTA ACTAAGAAGC CTGGAAGGAA GTCTGCTTCT GTTTTATTAT
  GCATTTTATG CTTCACTTGA TTATTTTATG GGCGGGTGTT TTGCCTCCAT GTCTGTGCAC
  CATGTCCATG GTTGGTACCT GTGGAGGCCA GGAGAGGGCG CTGGCTCCCA TGGAGCTGGA
  T
  CCTAAAGGTG CTGACAGCTG AGCCCAGGTC CGCTGCAAGA GCCGCATGCA CTTCTCAGCA
  CCGAGCGAGC CATCTTCCCA GCCCCGGGAG TCTATTTCTT AAAAAGCCCC TAAACAGATA
  CAGTTTATTT TAACCCTATT TAATTAGTGT TTAATAATGG GCAATGAATC TCTAACCAAT
  CATACGTACG CATATAACAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321010306	CHEV_3_146086894	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254013672					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129685 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	16 bp distal
Ssx2ip	SSX family member 2 interacting protein	Intron