rs253996888 SNP Detail

Summary

• ID
  rs253996888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107601860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTAGTC AGTGTAGTTC
  TGGGCTGAAC CTATGCCCCT GATTTCAAGA AGAGAGAGGC CAGGTGTGGT GGCTTATGCC
  TATAATCCGA GAACATGGGA GACAGAGGCA GGTGGGTCTC TATGAGTTCA AGGTCAGCCT
  GGTCTGCAGA GTGAGTTCCA GGTCAGCCAA GGGTAATACA GTGAGACTCT GCCTCAAAAA
  R
  GGAAGAAGAA AAGAGATGAG GGAAGAAAGA AGAAAAGAGG AGAGGAGAAA AGAGAAGAGG
  AGAGGAGGAG GAAAAGGAGG AGGAGGAGGA AGAGGAGGAA GAGGAGGAAG AAGAGGAGGA
  GGGAGGAAAT CATCTATTCT GTTTCCAAAA TGGGAGGCTT GGCCTCCATG TCCCCATGTC
  TGGAGGTGAT GGAAGGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250734	CHEV_4_107417268	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253996888					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107601860 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	379 bp downstream
Rr597058	regulatory region 597058	445 bp proximal