rs253995374 SNP Detail

Summary

• ID
  rs253995374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148083311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCATGCT GTGCCAGCAT
  CCCTGCCTGG GTCTATGAAT GATGCCGAGG ACTCGGCCTC AGGTCCTCCT GCTTGGGAGA
  TCAAGCATAC ACCCAGCCCT ACCTATTGCT TTTCTTTTTA TCATTCCTAA AGCTAAGGCT
  GGCTGGCTTC TGGACATCTC AGGAAGGTAC CCCAAAGCAG AGCAGGACTA GAGATATGGA
  R
  AGAAACTTCA CATTGGGTTG CCTTCCGATT GGTGCTCAAA TCAAAGGCTT CTAGAGGACT
  GGGCTGAGTG GGTGATGGGC TCCACCACTT GTCAGACACA GTATTATACA CTGTGTTGGA
  CATGGCGGCA CTGAGGTACG GAGAGCATGC AGAGCATCAC AGCAGAGCAT CTTTTGCCCC
  TGCCCCTCAA GGAAACCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321416321	CHEV_4_147372963	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253995374					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148083311 () rs orientation: forward

Symbol	Name	Function Class
Nppa	natriuretic peptide type A	1868 bp upstream
Rr407043	regulatory region 407043	1071 bp proximal
Rr604546	regulatory region 604546	1378 bp proximal
Tssr40239	transcription start site region 40239	1779 bp upstream
Tssr40240	transcription start site region 40240	1881 bp upstream