rs253969850 SNP Detail

Summary

• ID
  rs253969850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141875967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT TATTTCATCC CCTTTCTTCT
  R
  AAATTGTTCC AGCTGAATCA GACGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320998850	CHEV_3_141833170	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253969850					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141875967 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	781 bp upstream
Cpgi13885	CpG island 13885	590 bp distal
Rr586389	regulatory region 586389	1004 bp distal
Rr586390	regulatory region 586390	424 bp distal
Rr586391	regulatory region 586391	886 bp distal
Rr586392	regulatory region 586392	727 bp distal
Tssr35928	transcription start site region 35928	945 bp upstream
Tssr35929	transcription start site region 35929	877 bp upstream