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rs253956196 SNP Detail
Summary
  • ID
    rs253956196
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:136055994 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTTGTCTT CATAAAGTTT
    TGAAAGTGTT CTGATATTTT ATAGCTTTAT TCAGAATTGT GGTTTGTATA CAGTGTGAAA
    CTCAAAGTTT TTTTTTTTTT TTTTCTTAAA GATTTATTTA TTTATTTATT TATTTGTTAT
    ATGTAAGTAC ACTGTAGCTG TCTTCAGACA CTCCAGAAGA GGGCGTCAGA TCTTGTTACA
    R
    ATGGTTGTGA GCCACCATGT GGTTGCTGGG ATTTGAACTC CTGACCTTCG GAAGAGCAGT
    CGGGTGCTCT TACCTACTGA GCCATCTCAC CAGCCCCCAT AGTTAAAGTT TTAATTGTTC
    CTTTTTACAT GTAATTATTT TGGCTATTGC TGATCTATAT CTAATTTCAT CCTCAAGGAC
    TCAGAATAAA TAAAAATAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ss363388771 MGP_WTSI_4_135884598 EVA_MGPV3 EVA_MGPV3 f SNP G A A G A A A A A A A A G A A A G A A G G A A A G G A A G A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
rs253956196 SNP G A A G A A A A A A A A G A A A G A A G G A A A G G A A G A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363388771 MGP_WTSI_4_135884598 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136055994 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hnrnpr heterogeneous nuclear ribonucleoprotein R Intron
Noncoding-Transcript-Variant
Rr602351 regulatory region 602351 395 bp distal
Rr602352 regulatory region 602352 11 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory