rs253894939 SNP Detail

Summary

• ID
  rs253894939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGGCCG CTGTGAGTGT CCCACTGCTC
  ATATGCAGGG CACAGGGCAA ACCTCCACAC AGGGCCCATC CCACTGAAGC TGGGGCTGTG
  ACTCCAGACA GCCCAGGGGC TCTGCTTCAC CGACAACCTC GTTCCCTCCT GAACTGCTGT
  K
  TCTGGAGTCT GCAGTCTGTG CCCTGAGTCC CAGCACGGCT CTGTAGCGTG GCACACACCG
  CCCTGCTCTC CTCCTTTTTG TGAGAGCAAA GGAGCAGAAG GCCATGCTTA GGAGCAGGGT
  GCCATGGGGT TCTCGTGACA CAGGTGAGGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433791	CHEV_4_151352316	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253894939					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062664 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11			Coding-NonSynonymous
				Intron
Rr605686	regulatory region 605686			272 bp distal
Rr605687	regulatory region 605687			452 bp proximal
Rr605688	regulatory region 605688			639 bp proximal