rs253875311 SNP Detail

Summary

• ID
  rs253875311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132783227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAACTT CCAAAGGAGC
  ATTCCTGAGG TCTGCATGGG GGTTGGGCCT CCAGGGATGG GAAGGGTGGG GAGGCAGGGC
  TGCAGGAGGA TGTGAGGCTG TAAATGTGCT GTGCTGGGTC TGTGTGCAAG CAGGTGTGTG
  GGGCTCTCTG TCCTTAGTGC ACAGGGTTGT GTATGCAAGA GTTACATAAG TGGCCTATGT
  K
  GGGGGAATAG TTAAGAGCTT CACATGTGTG CTGTAGTGGT GACTGCTGGC TATGGATCCT
  ATGCAGGTGT GGGTATCCTG GGCTGTCTAC CACACAGGGT ACTAGTGGAC CAAGACTCAA
  ACACCCTTGG GTGGGTTTGT GTGTGCTCAG GGTTCTGAGC ACAAGGTGAG GTGGCATGTG
  CACATGGCTC CCTTTGTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SM/J	SPRET/EiJ
ss363307606	MGP_WTSI_4_132611831	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SM/J	SPRET/EiJ
rs253875311					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363307606	MGP_WTSI_4_132611831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132783227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			within coordinates
Rr601174	regulatory region 601174			624 bp proximal
Rr601175	regulatory region 601175			1192 bp proximal
Rr601176	regulatory region 601176			1247 bp proximal
Tssr39445	transcription start site region 39445			812 bp downstream
Tssr43733	transcription start site region 43733			254 bp downstream