rs253874348 SNP Detail

Summary

• ID
  rs253874348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccactgat gtcatcctca ctcagctcgt
  gcagtcgtgc atgggactta atagtagctt ctgatattgc taggagacac aatttccaaa
  caaactccct gatcttcttg catttatgat ctttctgccc cctcctctat aatgttcctg
  W
  gttttaggta cagaaatatt ctgtaaattt atctattgga actacattct ggttagctgt
  gattttttgc agtggtctct gtctgttgca aagTTAGGAG AACTGATTTC AGTTTGTGTC
  AAGCTGACAA AAACTAACCC AGAAGGCCAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439077	CHEV_2_102429164	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253874348					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419352 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	577 bp downstream
Rr561706	regulatory region 561706	952 bp proximal
Rr561707	regulatory region 561707	1184 bp proximal