rs253864426 SNP Detail

Summary

• ID
  rs253864426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68521733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCGATT AAAGGCTAAA
  GGCAAAGAAA TCCCCCTCGA AATGGGAGCC CATTGAAGAT GTCTTTACTA AAACCCTTTC
  TTAATCAGCC ATGATGTCCC ATTGTCCCTG TGAGCAGCTT TCTTACTGCT GTAAGGAATT
  ACAAGCCCTC CCCCCACCCC ACCCCCATCC CACCCACCCA AGCTTCATTC AGTTTCCCAC
  Y
  GGGCTACTAT GCTACTAAGG TGGGGTGGGG GCTCTGAATC TGTACTGGAA GCATTCTTGA
  AGTCCCCCCA GCTGTTAGAA GTTCCTTGTG GGTGGTTGGC CAGTTGGGGG CAGAGCTGTA
  GAATTTATAA TCATTTTTTG CTCAGAATGA AGATATTTGT CCGTGGGCAT CTTTAACTTG
  GTTTTGTGAT ATCCTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358304864	MGP_WTSI_3_68418322	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253864426					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358304864	MGP_WTSI_3_68418322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68521733 () rs orientation: forward

Symbol	Name	Function Class
D3Mit355	DNA Segment, Chr 3, Massachusetts Institute of Technology 355	1760 bp distal
Gm57836	predicted gene, 57836	1373 bp downstream
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578048	regulatory region 578048	96 bp proximal
Rr578049	regulatory region 578049	647 bp proximal
Rr578050	regulatory region 578050	874 bp proximal
Rr578051	regulatory region 578051	1087 bp proximal
Schip1	schwannomin interacting protein 1	Intron