rs253852914 SNP Detail

Summary

• ID
  rs253852914
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCGCCGA TTGGCCGGCC
  GGGCTCCGGA GTGCTTAGCC AATCAAAAGG GACGATGGAG AGCGGGGGAC GGAAGAGCGA
  AAGGAAAGGG GAAGGGAGAG TCTGGGGCAG GAAAGGGACG GGGCGCAGGA GCTTGGGAGG
  GGAGGGGTCA CGCGCGGAGG GAGAAACCCG AGGCAGCCGA AGAGCAGCAG ATCCGGGAGC
  S
  GGCGGGGATG GGCAGGGTGT AGTGGTCCTG GTTATGGTGG GATGATTCCC GGGGTGGCTT
  TAGATGTTGG GGTTCTGAAC TTCGTTCTTT TCTCCCCCGG TGTTACTTGA GCGCTTCATT
  CACTTTGGAA GGCAAAGAGG TGTGTCTAAG CTACATGTGA AGTCCTAAAC CCTGAGTCCT
  GTTCTGGGAA CTGCGAACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358315298	MGP_WTSI_3_68931241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253852914					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358315298	MGP_WTSI_3_68931241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	within coordinates
Kpna4	karyopherin subunit alpha 4	227 bp upstream
Rr397714	regulatory region 397714	8 bp downstream
Rr578129	regulatory region 578129	1344 bp distal
Rr578130	regulatory region 578130	1263 bp distal
Rr578131	regulatory region 578131	1115 bp distal
Rr578132	regulatory region 578132	within coordinates
Tssr902	transcription start site region 902	285 bp upstream
Tssr33536	transcription start site region 33536	1949 bp upstream
Tssr33537	transcription start site region 33537	434 bp upstream
Tssr33538	transcription start site region 33538	259 bp upstream
Tssr33539	transcription start site region 33539	234 bp upstream
Tssr33540	transcription start site region 33540	210 bp upstream