rs253848222 SNP Detail

Summary

• ID
  rs253848222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:60466094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATTTC ATGTTAGAAG
  ATAAGAAAAT ATTTCCCTGA CTCAATAATT TAATGCAGAG ATGATAATAC ATGTTGTAGT
  ATGCTAGGAA TAATGGGATT ATTATGAAAG AATTTGCAAT GTTTTAAAAA TAATATAATT
  AAAAACAAAT ATGACATATA TCTAATATAG TATTGACTGA AAGGGGTATA TTTATGAATA
  M
  ATATTTTATA TTACAGAAAT CATTATATTA TATAAATAAT ACATATTTTG TATAACATAA
  ATATAGAATA CCTAATACAA TAATATAATA AATAAAAGCA TACGATAATA ATCAGTAAGA
  AACAAGGTCA TAAATTTAAA GGAGAGTGTG AATGGGCACA CACTCAGATT TTTATGGGGA
  CAAGAGAATT TTTAAATGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss368487449	MGP_WTSI_6_60439104	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs253848222					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368487449	MGP_WTSI_6_60439104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:60466094 () rs orientation: forward

Symbol	Name	Function Class
Gm44410	predicted gene, 44410	846 bp upstream