rs253831674 SNP Detail

Summary

• ID
  rs253831674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43959697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCTGAA ACTCACTAGG
  GAGACCAAAC TGCTTTCAAA CTCACAAAGA ATCACCTGCC TCTGCTTCTC TGGTGCTGGG
  ATTTAAAGAT CACCCCTCCC TGCCCCACCC ACTCTAAAGA TACATAGTTT CCAGCTCCTG
  CTCTAAGAGA CAATTTTCTA GAACTGCGCA TGTGCTGACC TCCTGCTACT GCTCTCCCCC
  M
  TCTCTCTCTG TGTCTCCTCC CTCTTACCCT CTGTCCTCTC TTCCAAACTG TGGACCGCGT
  GCAGTGGAGG GACAGCCCGA TCTTTAGGAA CGTCCATTTG AGTTGTGAAA TGAGTAAATG
  AAACTGATTG GGGAAGAGAG TCAGGAAGAG ATGGGAAATG ACCCAGGCTC AGGGTCTGCA
  AGTGAAGGAG GGCTCAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321099583	CHEV_4_43972569	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253831674					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43959697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	1267 bp distal
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr398233	regulatory region 398233	within coordinates
Rr591111	regulatory region 591111	1995 bp distal
Rr591113	regulatory region 591113	1185 bp distal
Rr591114	regulatory region 591114	872 bp distal
Rr591115	regulatory region 591115	within coordinates
Rr591116	regulatory region 591116	101 bp proximal
Tssr37006	transcription start site region 37006	1962 bp downstream