rs253825271 SNP Detail

Summary

• ID
  rs253825271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121934254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAATGTTAT GTCTGGTAGA CGTTTTAGAA AACAATTCCT
  CACAAACTTT CTCAGGCATC TGCAATTGTT GCAGCCTGCT ACCCTGGTAC TCAGGCCAAT
  Y
  TGAGAAACAG GTAATAGACG CACGTACGGT CAGATGCAGG ATCTGATCTT AGCCCAGCCA
  CACGCAAGCT GGTCCACTTT TCTTAGCTTC CCTTTCTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320908771	CHEV_3_121843523	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253825271					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121934254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm43158	predicted gene 43158			within coordinates
Rr584243	regulatory region 584243			156 bp proximal
Rr584244	regulatory region 584244			414 bp proximal
Rr584245	regulatory region 584245			1522 bp proximal