rs253795276 SNP Detail

Summary

• ID
  rs253795276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142618628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACATT GGGTGCTCTG
  CTTAAGCTTC CCCTACCATT CTCTTAGCCA TCCACCCACA CACAGGATCC CGTCCTTAGA
  GTTAGGTGAG CCAAACAGTT ATACACCAGT GTTCCTGAGA TGAGGTGCCT GGAGTTGGTT
  ACTGCCATAG CTTACCCTTG ATTTCACACT CACCGAGTAT TGGGAGTCTT GGGCATTGGC
  Y
  CCTGACACCC AAGCCACTTC CCCTAACTGA AACGGATAGT CCGTCTCAGC CCTTTACAGT
  GCGTGCTGAG GGTTCCTGTT CTCAGATGCA GGTGGTGGGA GACTGGCTCC AGAGCAGAGC
  ATACCTGTGA AATGGAGACC ACCCATGTTC TCTGGTCACT GAATTGCTGC TTTGTCCCCT
  GGTGGCAGTG GCAGCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473963	CHEV_7_150250796	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253795276					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142618628 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	Intron
Rr366644	regulatory region 366644	1134 bp downstream
Rr658333	regulatory region 658333	1803 bp distal
Rr658334	regulatory region 658334	177 bp distal
Tssr70273	transcription start site region 70273	57 bp upstream
Tssr70274	transcription start site region 70274	78 bp upstream
Tssr70275	transcription start site region 70275	863 bp upstream
Tssr70276	transcription start site region 70276	893 bp upstream
Tssr70277	transcription start site region 70277	1042 bp upstream
Tssr70278	transcription start site region 70278	1839 bp upstream