rs253778131 SNP Detail

Summary

• ID
  rs253778131
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37710209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG ACTAGAGTTG GAGCATCATC
  T
  AGGAACCAAA GAATCTTGGG AAGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320711569	CHEV_3_37554982	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253778131					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37710209 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	within coordinates
Gm65224	predicted gene, 65224	within coordinates
Rr575530	regulatory region 575530	1470 bp distal
Rr575531	regulatory region 575531	974 bp distal
Rr575532	regulatory region 575532	31 bp proximal
Rr575533	regulatory region 575533	920 bp proximal
Tssr28918	transcription start site region 28918	1629 bp downstream
Tssr28919	transcription start site region 28919	1555 bp downstream
Tssr28920	transcription start site region 28920	1282 bp downstream
Tssr28921	transcription start site region 28921	33 bp downstream