rs253776503 SNP Detail

Summary

• ID
  rs253776503
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79960997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCGTCA GGTTTAATTT
  TCTCAGAAAA GTTATTTCCT GAACTCAAAC AAGCATAATG TCATCAGTGT CCAAACACTT
  CTCTCCACTC AGACTCACTT CTCTGAGCAG CTGTTCGAGT TGTCAAAACA TATTGATAAG
  GATACTATTA CCTAGGTGTT CATCTTTGCT CAGAAGGTCA CAATTTTACC TCTACTGTAT
  S
  CTCATTTATT ATCTTAGACA CCTTCACTTA GTAAACTTCT ATATAATTTT TCTTAATGGA
  TAATGAGCAA ACCACCTGAA TTCTGCTAAG ATGGACCATA GCCCAAAATA TGCATAAAAT
  GTCATTATTG CTTATGACTT AAAATACCAA AGTCTTTGAA TATACAGTAA CACCTTTCCC
  ACAAATAACT CTCTAAACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354604758	MGP_WTSI_2_79970810	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253776503					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354604758	MGP_WTSI_2_79970810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79960997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	1405 bp distal
Gm13674	predicted gene 13674	1277 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	1224 bp distal
Rr560062	regulatory region 560062	705 bp distal
Tssr24917	transcription start site region 24917	1657 bp upstream
Tssr24918	transcription start site region 24918	1630 bp upstream
Tssr24919	transcription start site region 24919	1515 bp upstream
Tssr24920	transcription start site region 24920	1480 bp upstream
Tssr24921	transcription start site region 24921	1461 bp upstream
Tssr24922	transcription start site region 24922	1410 bp upstream
Tssr24923	transcription start site region 24923	1375 bp upstream
Tssr24924	transcription start site region 24924	1349 bp upstream
Tssr24925	transcription start site region 24925	1104 bp upstream