rs253771071 SNP Detail

Summary

• ID
  rs253771071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100762815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCAGGG AAATTTCTGT
  ATGTTTCTTA CAGGTGGTCA GGCCCACCAA AGGGGTCAAC CTACGGTCAG CTGTTAATCC
  TTGTGTGATC AAGCAAGGGT CATTAGGGAA GTCCCAGAGT ACAAAGGGAG CAATCCAAGG
  ACACAGGGTA CTCCCAGGGG CTGTCTGCCT ATGGTGACTG TGGCTCCAGG AGGCTAGGCC
  Y
  TCATGGGGAT GGGCCTGGCA GCCTGATCTT ACACCTGGAT TCTCACAAGC TTTATAAGGC
  CGTATCTGCA GGACTGTGCC CAACTCTCAA ATATGAGAAT GTAGGTCTCA GCAACTACGG
  GTGGGCACTG AAAAGACTTC CTCTTGGGAG GCTGAATAAT ATATTCCCTG TTTGGGCTGA
  AGAGATGGCT CAGTGGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849822	CHEV_3_100659422	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253771071					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100762815 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	860 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron