rs253758259 SNP Detail

Summary

• ID
  rs253758259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65176464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctctctctc tctctctctc tccctgtctA
  TGTGTTGCTT TCCAGCATGT GAAATGGCTT GTGTGTTTTT CAAAATCCCG TTAATGTAGC
  TTAGGATGCT ATCTTACATC TGCCCTATCT TGAAAACCCC CATGGGGTTT ATTGGTGTAG
  Y
  TGTGGTTTCT GAAAAAAAAA AAAATTACTA GTCTTGAATC TTGGATCAAA CCTGAAGGTT
  CCCAGAGTCA ggctaggcat acagttagtt ggtaaagtgc ttgcagtagc catagtcccc
  tccccaccct cgtgaaaaca aaggtgggac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325655616	CHEV_18_65203047	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253758259					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65176464 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539433	regulatory region 539433			279 bp distal
Rr539434	regulatory region 539434			110 bp proximal