rs253754516 SNP Detail

Summary

• ID
  rs253754516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116649058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTGCCT GGGTCCAGGA
  GTGCAGCCCA GCTGAGCAGC CCCCCTGACT ACTTGGTACT GGCTGCCAGG TTGTTCTCAA
  CACTGTAATA TCTGCCACAC GCATGCGACC TTTGGCCTAG TCTGTGCACC ATGTGCAGAT
  GCTGGGAGAG GTTTCTCTGG AGACCAGTTG CTATGTCTTA GAATCCCTTG GGACATGGAT
  Y
  CCTTTGAAAA CATAACACCA TCATCCCCGA ACAAGAAAAA TGGGTGAGTG TGACTGTGCA
  TGCATACACA CACACACACA CACACACACA CACACACACA CGAGAGGGAG AGAAGGGGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA GCGTGAGTGA
  ATGAGGATGA TCAGGATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369778446	MGP_WTSI_6_116622115	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253754516					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369778446	MGP_WTSI_6_116622115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116649058 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	557 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr368159	regulatory region 368159	1679 bp upstream
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	1816 bp distal
Rr637232	regulatory region 637232	837 bp distal
Rr637233	regulatory region 637233	156 bp proximal
Rr637234	regulatory region 637234	568 bp proximal
Rr637235	regulatory region 637235	1057 bp proximal
Rr637236	regulatory region 637236	1655 bp proximal
Rr637237	regulatory region 637237	1702 bp proximal
Tssr58385	transcription start site region 58385	546 bp downstream
Tssr58386	transcription start site region 58386	259 bp downstream
Tssr58387	transcription start site region 58387	1815 bp upstream
Tssr62606	transcription start site region 62606	667 bp upstream
Tssr62607	transcription start site region 62607	342 bp downstream
Tssr62608	transcription start site region 62608	1674 bp downstream
Tssr62609	transcription start site region 62609	1693 bp downstream