rs253733317 SNP Detail

Summary

• ID
  rs253733317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:4344668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTTATC CTATTTTACA
  TTAATTATGG TTGAAAGCTT CAAAAGATGT ATGCATCTGC AATACAGTGG TAAACAACAT
  GGCTCTTGCT TTTTGTTTTC CCCACTGACT GTTGCTATTG TAAAAGTTAA CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTTT CACTCGCAGT TTTTTTGTTT TGTTTTTTTT
  Y
  CTTTTGGTCA GTAAAGACCA AAAGACCTTG ATAACAATTC TTTCCAGCTA TTTTTTTTTT
  TAACTGCAAG CAGGATTCAA ATGAGAAACT AAGTATATTC TTTTCAACAG GCAATTTACC
  CCATGATGAG ATGCTTTCAT TTAGTTTTCT TTGATATTCT AGCATCTAGC AGCACAGCAG
  GTACCTGGAG GTTAGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320635462	CHEV_3_4279608	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253733317					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:4344668 () rs orientation: forward

Symbol	Name	Function Class
Rr573153	regulatory region 573153	1215 bp distal
Rr573154	regulatory region 573154	806 bp proximal