rs253731256 SNP Detail

Summary

• ID
  rs253731256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132293027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGTGAG CTGGGGTGGG
  GGATGGTGAC TGCCAGAGAA GAGGGAATCC TTTCCTCTGC ACACCCAGCC AGAGAGAAAA
  GGAGATGACT GGCCGTCTGT GTCTGCCATT TTGCTTATAA TCTGCGGCGA CCTTGGGCCA
  TTGAGTAGTC TCGATTTTCT TCTTTGTGGT TTAAAATTCT GACCTTGTAG GTTTGTGGAA
  R
  GATGAACTAA GAAGGTGGGG GACGTGCTTT GCTGAGCATA AAACAGTAAG AACAGGAGTG
  TCACTGTCAA TGCTGACAAG AGGAGCAATT GTTTGTGCGT TTATCGTCTC TTCTCCTAGC
  TAGCAGGGTT TGGCAGAAAA ACGTGCACAG GAATATGCAC TGAGTTGGGA ATGGTGGGCA
  CATCTGTGAT CCCAGCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363296984	MGP_WTSI_4_132121631	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253731256					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363296984	MGP_WTSI_4_132121631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132293027 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1639 bp distal
Rr601016	regulatory region 601016	1419 bp distal
Rr601017	regulatory region 601017	1591 bp distal
Rr601018	regulatory region 601018	1436 bp distal
Rr601019	regulatory region 601019	204 bp distal
Rr601020	regulatory region 601020	1595 bp proximal
Tssr39385	transcription start site region 39385	1979 bp downstream
Tssr39386	transcription start site region 39386	1640 bp downstream
Tssr39387	transcription start site region 39387	1623 bp downstream
Tssr39388	transcription start site region 39388	1506 bp downstream
Tssr39389	transcription start site region 39389	348 bp downstream
Tssr43688	transcription start site region 43688	1748 bp downstream
Tssr43689	transcription start site region 43689	1775 bp downstream