rs253715583 SNP Detail

Summary

• ID
  rs253715583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132738676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCCCA GAAAGTCGCA
  GCCCTTTTGG CTCATCCTCT GATGCCCGAT TCCACTCATT TTATTCTCAG ACCCCGCCCC
  TGCGCTACCA CCCGCAACCT TGGCGCAGCC AGAGCCCCGA GTAGGGGCCT CGGAACGCCC
  GGAATGTTCC TAACCCTTGA GGAGGATCAG CAGTCCTAGA TAAAACGGGA TTCATCCGGG
  Y
  CAGGGATACT CCGGCATAGG GTCCGCTCCG GGCCGCGCCG TCGGAGCAGC CGGAGTGGCC
  CCGCCCGCAC AGCGCGCGGA GCGGCCGAAC AGGGACTACA AGTCCCGGCG TGCTCTGCGC
  GCGCTCCCCC CTGGGGTTCC GGATGGTGAG CAGCGAAGGT AAGGCGAGCT CGCAGAGGCA
  ACGGCGGCGG CGGCGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338139	CHEV_4_132567280	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253715583					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132738676 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982	within coordinates
Rr601152	regulatory region 601152	1350 bp distal
Rr601154	regulatory region 601154	within coordinates
Rr601155	regulatory region 601155	304 bp proximal
Rr601156	regulatory region 601156	349 bp proximal
Rr601157	regulatory region 601157	850 bp proximal
Tssr39436	transcription start site region 39436	118 bp upstream
Tssr39437	transcription start site region 39437	153 bp upstream
Tssr39438	transcription start site region 39438	429 bp upstream