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rs253705120 SNP Detail
Summary
  • ID
    rs253705120
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:19365896 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCGCGCCCC GCGCCCCCCC
    GGCCCCTCCC GCCTCCCCGC AGCTCCCTCC CCGCAACCCG CGGCGCGTGC GCAGGAGAGT
    TACGTGGGGC ATCCTCGGGC GCACCGACCC GGAGTTTGTT CGGCCTACCG GATCGGCGCT
    GTTTCGTCCG ACAGATCCAA AATGCCCAGA GCACCGGGCG CCCTCTCCGT GCTCCGCCCG
    K
    CGGGGCACCG CGCGCGTCCC CTGTGGAATT CCCGTACTAG GGCGTCGCGG GAGGCCGCTG
    CGGCGGTGAC GCCAGCAGAT CTCGGGGGCT CAGTGCTCCC GCTATGTCAC CGTCCGTGCC
    CTACCTAGGC AAGGTTCCAG TGGCTTCCCT TGGCAAGTGA GGCCCCAGAC TTTCGGGGCC
    TGCAGAGCAG AAAAAGACCA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320678396 CHEV_3_19211732 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs253705120 SNP T G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19365896 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene Coding-Synonymous
Cpgi13002 CpG island 13002 within coordinates
Gm66414 predicted gene, 66414 within coordinates
Pde7a phosphodiesterase 7A 410 bp upstream
Rr573969 regulatory region 573969 421 bp distal
Rr573970 regulatory region 573970 85 bp distal
Rr573971 regulatory region 573971 within coordinates
Tssr28510 transcription start site region 28510 1027 bp downstream
Tssr28511 transcription start site region 28511 873 bp downstream
Tssr28512 transcription start site region 28512 259 bp downstream
Tssr28513 transcription start site region 28513 237 bp downstream
Tssr32696 transcription start site region 32696 469 bp upstream
Tssr32697 transcription start site region 32697 418 bp upstream
Tssr32698 transcription start site region 32698 388 bp upstream
Tssr32699 transcription start site region 32699 354 bp upstream
Tssr32700 transcription start site region 32700 329 bp upstream
Tssr32701 transcription start site region 32701 460 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory