rs253705120 SNP Detail

Summary

• ID
  rs253705120
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19365896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCGCCCC GCGCCCCCCC
  GGCCCCTCCC GCCTCCCCGC AGCTCCCTCC CCGCAACCCG CGGCGCGTGC GCAGGAGAGT
  TACGTGGGGC ATCCTCGGGC GCACCGACCC GGAGTTTGTT CGGCCTACCG GATCGGCGCT
  GTTTCGTCCG ACAGATCCAA AATGCCCAGA GCACCGGGCG CCCTCTCCGT GCTCCGCCCG
  K
  CGGGGCACCG CGCGCGTCCC CTGTGGAATT CCCGTACTAG GGCGTCGCGG GAGGCCGCTG
  CGGCGGTGAC GCCAGCAGAT CTCGGGGGCT CAGTGCTCCC GCTATGTCAC CGTCCGTGCC
  CTACCTAGGC AAGGTTCCAG TGGCTTCCCT TGGCAAGTGA GGCCCCAGAC TTTCGGGGCC
  TGCAGAGCAG AAAAAGACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678396	CHEV_3_19211732	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253705120					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19365896 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	Coding-Synonymous
Cpgi13002	CpG island 13002	within coordinates
Gm66414	predicted gene, 66414	within coordinates
Pde7a	phosphodiesterase 7A	410 bp upstream
Rr573969	regulatory region 573969	421 bp distal
Rr573970	regulatory region 573970	85 bp distal
Rr573971	regulatory region 573971	within coordinates
Tssr28510	transcription start site region 28510	1027 bp downstream
Tssr28511	transcription start site region 28511	873 bp downstream
Tssr28512	transcription start site region 28512	259 bp downstream
Tssr28513	transcription start site region 28513	237 bp downstream
Tssr32696	transcription start site region 32696	469 bp upstream
Tssr32697	transcription start site region 32697	418 bp upstream
Tssr32698	transcription start site region 32698	388 bp upstream
Tssr32699	transcription start site region 32699	354 bp upstream
Tssr32700	transcription start site region 32700	329 bp upstream
Tssr32701	transcription start site region 32701	460 bp downstream