rs253703025 SNP Detail

Summary

• ID
  rs253703025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121130220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCTTCC CTGGTGGCCG
  TGGGGACTCT GCTCTCTTTG CTGTCAATGG CTTTAACATC CTGGTGGACG GCGGTTCTGA
  CCGCAAGTCC TGCTTCTGGA AGCTGGTGCG GCACCTGGAC CGCATTGACT CGGTGCTGCT
  CACGCACATT GGGGCTGACA ATCTGCCAGG CATCAATGGG CTCCTGCAGC GCAAGGTGGC
  M
  GAGCTAGAGG AGGAGCAGTC CCAGGGCTCC AGCAGCTACA GCGACTGGGT GAAGAACCTC
  ATCTCCCCTG AGCTCGGAGT CGTGTTCTTC AATGTGCCTG ATAAGCTCCG GCTGCCCGAC
  GCCTCCCGCA AGGCCAAGCG CAGCATCGAG GAGGCCTGTC TCACCCTTCA GCACCTGAAC
  CGCCTCGGCA TCCAAGCCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355464421	MGP_WTSI_2_121125475	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253703025					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355464421	MGP_WTSI_2_121125475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121130220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			within coordinates
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			1987 bp distal
Map1a	microtubule-associated protein 1 A			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr563802	regulatory region 563802			1253 bp distal
Tssr19741	transcription start site region 19741			1131 bp downstream
Tssr19742	transcription start site region 19742			238 bp downstream
Tssr19743	transcription start site region 19743			624 bp upstream
Tssr19744	transcription start site region 19744			894 bp upstream
Tssr19745	transcription start site region 19745			1203 bp upstream
Tssr25921	transcription start site region 25921			928 bp downstream
Tssr25922	transcription start site region 25922			1526 bp downstream