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rs253693746 SNP Detail
Summary
  • ID
    rs253693746
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr3:109480459 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      agcagCCTG CTCTAGCAGG GCAGGTGTCC
    TGGAAGGAGC TTTCCCTGTG AACTCTGGCC GAGTGGATTC TTGGAGCCTT TTAAGGAAAC
    ACTCTACAGA GCTGTATCCA GGCCTGCCCG TGCTCTCCTG ATGTCTCCTT TGGTTGCGTC
    C
    GTtctctctc tctctctctc tctctctctc tctctctctc tctcAGATCC TTTCTTAGTG
    GCTATTTTGG ATGGGAAATG TGCAGGCATG GGCTCAGAGC AGTGAGGGGT TTTTCACTCC
    AGCTGGAGAA GTTCTAACTT GTCTAGATGC                                 
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320869965 CHEV_3_109376061 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs253693746 SNP C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:109480459 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr583431 regulatory region 583431 within coordinates
Rr583432 regulatory region 583432 501 bp proximal
Rr583433 regulatory region 583433 775 bp proximal
Tssr31300 transcription start site region 31300 826 bp upstream
Tssr31301 transcription start site region 31301 858 bp upstream
Tssr31302 transcription start site region 31302 876 bp upstream
Vav3 vav 3 oncogene Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory