rs253693746 SNP Detail

Summary

• ID
  rs253693746
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109480459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agcagCCTG CTCTAGCAGG GCAGGTGTCC
  TGGAAGGAGC TTTCCCTGTG AACTCTGGCC GAGTGGATTC TTGGAGCCTT TTAAGGAAAC
  ACTCTACAGA GCTGTATCCA GGCCTGCCCG TGCTCTCCTG ATGTCTCCTT TGGTTGCGTC
  C
  GTtctctctc tctctctctc tctctctctc tctctctctc tctcAGATCC TTTCTTAGTG
  GCTATTTTGG ATGGGAAATG TGCAGGCATG GGCTCAGAGC AGTGAGGGGT TTTTCACTCC
  AGCTGGAGAA GTTCTAACTT GTCTAGATGC                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869965	CHEV_3_109376061	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253693746					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109480459 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	within coordinates
Rr583432	regulatory region 583432	501 bp proximal
Rr583433	regulatory region 583433	775 bp proximal
Tssr31300	transcription start site region 31300	826 bp upstream
Tssr31301	transcription start site region 31301	858 bp upstream
Tssr31302	transcription start site region 31302	876 bp upstream
Vav3	vav guanine nucleotide exchange factor 3	Intron