rs253682243 SNP Detail

Summary

• ID
  rs253682243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134639444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    catccatcc atccatccat ccaaaaaaaa
  aaaaaCCAAA GAGCTTATGA TCTTCCTAAT GCTTCTCCCT ACCAGATTAG GGAGAATATG
  AACTCTCCTG TCCTGAAAAA TGGGAATATC TATCTCGACT GGTTTGGACC TGATTGTCTC
  R
  TTAATCCttt cttccttttt tttttttttt ttttttttgt tgtttttttt tgttgttttt
  cgagactggg tttctctgta tagccctggc tgtcctggaa ctcactttgt agaccaagct
  ggcctcgaac tcagaaatct gcctgtctct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349927	CHEV_4_134468048	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253682243					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134639444 () rs orientation: forward

Symbol	Name	Function Class
Rr601858	regulatory region 601858	1016 bp proximal
Rr601859	regulatory region 601859	1514 bp proximal
Tmem50a	transmembrane protein 50A	Intron