rs253679517 SNP Detail

Summary

• ID
  rs253679517
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98887093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGCAGT TTGGATGGGA
  GATAGCAGGA AAGCTAAGTT TAAAAGACAG CAAGAGTAAA AGAACTGAAG ATACAAGGTT
  TACAAAGTAA ACGAACCAAG ACACAAAGTA TAATGGGCTC TACTTTAAGA GACAGCAGAG
  CTGGCATGAT GGCACATTCC TTTAATCCCA GCACTGGTTC TAGGATACAC TCCCTCCCCC
  W
  CCCCCACCCC CCAATATCAG AAAATAGTGT ACAAAGTAGC AGCATGAACA CCAGGGAGAA
  TTTCTAAAGT GAGAACTAAC ATGTCTGTCT GTCTGTCTAT CTGTCTGTCT GTCTGTCTGT
  GAATGAAAAT GATTCAGTAT ATAGGAGGGA ACTGATCATT CAGGACAAGA GATCAAAGAA
  CTCCTAGAGT GGGAATCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222459	CHEV_4_98665547	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253679517					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98887093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595814	regulatory region 595814			1783 bp proximal
Tssr42518	transcription start site region 42518			1119 bp downstream