rs253660489 SNP Detail

Summary

• ID
  rs253660489
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72595939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT GCCTCTGCAT TTTGTGCCTG
  T
  CTGGGGCCAA AGGAAGCCAA AGGAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321822466	CHEV_6_72568950	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253660489					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72595939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1761 bp distal
Gm67593	predicted gene, 67593	50 bp downstream
Rr632246	regulatory region 632246	1967 bp distal
Rr632247	regulatory region 632247	1466 bp distal
Rr632248	regulatory region 632248	447 bp proximal
Tgoln1	trans-golgi network protein	1956 bp upstream