rs253637089 SNP Detail

Summary

• ID
  rs253637089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGTGA CATATAGGCC
  ATGCAGACTG GATACCACTA CCTGTTCCTG TGGGTAGGGT GTCCTCACTG AACCCCAAAG
  AGGCACAGAC CTGTCTGGCA CAGAGATAAT CACAATCTTC CTCCACACCC CCTCTACCTC
  CTTTACCTTG CCCTTCAGGC TGTAAGTAGT AAGTGGCCCG AGGGTGTAGA TAACCAACAC
  W
  GCCAGATATG GGAGCCTTCC AGCTCACCCT AAAATTCCTC CAGCTACCTG ACCATCATTT
  CCAAAGAATG TGACATTTGT TCCTGTCCCT TTCAACTCAC AAGGACTTGC ATTGCTGGAC
  CAAGTCTGGC GTGGTTAATG GCAAGGGTCC TGCAGATTTC CCAGGCAGGA GGTGGGGGTA
  GCAGCCAGCC CCAAGAGCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958624	MGP_WTSI_10_76494325	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253637089					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958624	MGP_WTSI_10_76494325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	886 bp proximal
Rr434375	regulatory region 434375	1515 bp distal
Rr434376	regulatory region 434376	614 bp proximal
Rr434377	regulatory region 434377	1073 bp proximal
Rr434378	regulatory region 434378	1142 bp proximal
Rr434379	regulatory region 434379	1416 bp proximal
Rr434380	regulatory region 434380	1563 bp proximal
Rr434381	regulatory region 434381	1699 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	689 bp upstream
Tssr94203	transcription start site region 94203	650 bp upstream
Tssr94204	transcription start site region 94204	678 bp upstream
Tssr94205	transcription start site region 94205	1131 bp upstream
Tssr94206	transcription start site region 94206	1660 bp upstream
Tssr94207	transcription start site region 94207	1680 bp upstream
Tssr94208	transcription start site region 94208	1710 bp upstream
Tssr94209	transcription start site region 94209	1724 bp upstream