rs253622496 SNP Detail

Summary

• ID
  rs253622496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTACAA AACAAACAAA
  CAAACAAGAC AGCAGCTGCT CCCGTATGTG GTGTCCAATC AATCCGGCAA CTTGTTCTAG
  GAAAGGGAAA GCTCCCTAGG CAGCTGTCAT CATGAAGGCC AAATTCCTCG GCAGAAGAGC
  TGAAGAGAAG ATAAAGGATG TTGGAGGTAC CTGTGCTCTG GTGGCTTGAA GCCACCCAGG
  R
  GGTTAATTAA ATGCTAATAT TAAAAAAAAT CTCTATGGGA ACACATGTTG TAAATCGTCC
  TGGAATTTTT TACCTCATCC AACTATTGGT TGCTGTGGGG GTTTTTTTTT GTTTGTTTGT
  TTGTTTTTTT TTTTGAGACA GGGTTTCTCT GTGTAGCCTT GACTATCCTG GAACTCACTG
  TGTAGATCAG GCTGGACTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759313	CHEV_11_79026757	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253622496					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104081 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	12 bp downstream
Gm74268	predicted gene, 74268	1338 bp downstream
Rr402771	regulatory region 402771	812 bp upstream
Rr452198	regulatory region 452198	473 bp proximal
Rr452199	regulatory region 452199	867 bp proximal