rs253621366 SNP Detail

Summary

• ID
  rs253621366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107184097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCCAGA TCCCATGGAT
  AACTGCCTGG GGCATGGTGG CACACATGTA ATCCCAACAT TGAAAAGGCT GAGATGGGTT
  GGGACAGGGA GATCCCTGGG GAAGCTGGCC AGTCAGGCTA GCCTAATCAA GCCCCAAACT
  ATCGATAGAC CCTGTCTCAA ACAAAAGAGT TTAATGGCAC CTGAGGAACA AGACAAGGCT
  R
  ACCTCTGACC CCCAACTGCA CATGCACATA CGTGCATGAA TATCTGCAAA CACACTGAAT
  CCAAGTATAC ACATGCATCA AGACACACAT GAACATACAT ACAAACACAC AATTCTGGAA
  GCATAGCCAA ATATGGGGCT CATATTAGAG CATTAGAAGG CTGAGGCAGG AGAATCACAT
  GTTAGAGATA ACCCTGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865188	CHEV_3_107079699	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253621366					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107184097 () rs orientation: forward

Symbol	Name	Function Class
D3Tem1	DNA segment, Chr 3, Temple 1	1286 bp proximal
Rr582953	regulatory region 582953	554 bp distal
Rr582954	regulatory region 582954	1708 bp proximal