rs253574675 SNP Detail

Summary

• ID
  rs253574675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76868052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACCCCA TTCGTATAGA
  TGACCATACC TATAGTCTAA CCTCCCGGCA CCCCACCACC TTGGGAATCT ATTAAACCAG
  AGTTGCTGGT CGGCCATTCC TCTTTGGACC CATGCCCCTC TCCATTCGTT CTACTTTGCT
  GCCCTCGCAA GTACTCCGCC AAAACCCATC AGGAGGAAAG AGGCTGGTTT CAGGGAGCCC
  Y
  GCCCTCTCCC AACCCACCTC AGGCTGCTAG CAGCCTCCAC CTGCTGAGCA TCAGCTGAAC
  ATCCCTGCTG GGGTGAGAGT TTGAAAGATT GGGGGATTGG TGGTGAAGGA GGGTGGGGTG
  GGGCCTAAAA CGCTTAGGCC AGACTTCTGT CCCTGTTAAC AGTCAAGTAG GTTGATACAA
  GGTGAGTAAG GTTTTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958641	MGP_WTSI_10_76494963	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253574675					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958641	MGP_WTSI_10_76494963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76868052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	248 bp proximal
Rr434376	regulatory region 434376	within coordinates
Rr434377	regulatory region 434377	435 bp proximal
Rr434378	regulatory region 434378	504 bp proximal
Rr434379	regulatory region 434379	778 bp proximal
Rr434380	regulatory region 434380	925 bp proximal
Rr434381	regulatory region 434381	1061 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	51 bp upstream
Tssr94203	transcription start site region 94203	12 bp upstream
Tssr94204	transcription start site region 94204	40 bp upstream
Tssr94205	transcription start site region 94205	493 bp upstream
Tssr94206	transcription start site region 94206	1022 bp upstream
Tssr94207	transcription start site region 94207	1042 bp upstream
Tssr94208	transcription start site region 94208	1072 bp upstream
Tssr94209	transcription start site region 94209	1086 bp upstream