rs253542190 SNP Detail

Summary

• ID
  rs253542190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54536097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAAAAA ACTGACCCAG
  GCTGAACTTG AACTCCCTGT GTAGCCAAGA ATGACTCTGA AATCCTAATT CTCCTGCCTC
  TACATGCTGA TTACAGATGT ACTTGCCACA CGCAGTGGTT TTATGTTGTA TCAGGGAGGG
  ATGCCACCCA GAGATTGTAC ATGCTAGGAA AACACTCTAC AAAATGAGAC ACATCACCAG
  K
  CCAATTAGCC AGTCTTGTGC AAATATCGTA TTGTGAACGT CCACAAACCA AGACAAGTCA
  GTCACTACTT GACTTGGCAT CTTGATGCAA TCTTGACTCA AAGTAGACAC AAGCTGTCTA
  AAGCTGTTGC TGGAGGAGCA CCAGGTACCG CTTCACAATA AACTTTTCTG TATAGAAGAG
  AACAGTCTCA AGTAAATAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772238	CHEV_3_54432598	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253542190					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54536097 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	1672 bp proximal