rs253527388 SNP Detail

Summary

• ID
  rs253527388
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141947058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTGTG GTGCCAGAGA
  GCTACGGGGC CGGGACCAGG ACCAAGAGGA GCGGGCCTGG GGCAAGAGTG GGGGTGAAGG
  CGTGCCCCAA ACCCTGGGTA TCTTCTCCTG AGATAAAGAA GAGTGAGATC ATTGTCCCAC
  TGCCCTGGGC CTGCATGTCC CTGCATACAG AGCCCTGTGC CCCCCCCCCC CACCTTTGCC
  T
  TATCAGAGGA GGTTATGTAG CTGGTATCGA GGTTTAACAT CTTTTCCCAT TATAAGGTCA
  TTTCAGGGGC ATCTGGGATT CCTCCTCATG CAAATGAGGC ATCCCCAGCC AATGGTGTAC
  ACTCGTCCCA GTAGCACCTA CTGACCCCCC CCACAAAGAT TTAAATAGCT TTTGTTTCCC
  CCCAATAAAT AGAGCCAGTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321393874	CHEV_4_141775662	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253527388					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141947058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			1162 bp proximal