rs253520274 SNP Detail

Summary

• ID
  rs253520274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCACCC GTTGCTGGCC
  GTGCAGAATG ACAAGCTAGC TCCAGGAGAC ACTTGCCAGC CTTTCGCCTT TCCTACATGG
  CTCCCTGCAC CCTCCTAAGG TTTAGCATGT TCTGGTTTTG TTTTTCATTT TTTTATTGCT
  GGGGATAGAC CTCAGGGCCT AGGCATGCTC AGGCAAACAT TCCACCACTG AACTACAGCC
  Y
  CAGCTCTTGT TTTTTAAGCT GAGTTCTCTA TGTAACTCAG GCTAATCTCA GCCTGTGGCT
  CTCCTGTGTT GTATTAAGTA TTTAATCTCA ATTGGGGGTT TCTACCCCAC TTTTGATCAT
  TCAGTTCCCA GATAAAAGAC AGAAAACTTT CATATTTATA ATAAGCCTTT AATGCACTAG
  AGCTGGGCAG ATATCTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353522	CHEV_4_135494067	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253520274					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			963 bp proximal
Rr602206	regulatory region 602206			997 bp proximal