rs253495993 SNP Detail

Summary

• ID
  rs253495993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCGGGAG GGGGTGGCCG
  AGGCGGCGGC GGCGGCGGCG CCCCCACGTG GGCCGGGCGC GCGCGTTCGC GGCTGAGGGG
  GCGGGGAGGC CTGCGGAGGC GCCGGGCGCG CGCGCGGGGC TCACGTGACG GCCACGTGAC
  CGGAGGCCAG GCCGGCTGAG GGCTAGCGCG GTCCTCCGTG GCGTCCGGAG GGCGGCAGAG
  R
  GCTGAGTTTG GCGTCCCGCC TTTCCTTCTC CCCTCAGACG ACTCAGAGGA GGAATCCAGG
  GCGGGGAAGG CTTGCCTCTC CTCCCGTTTG CCCGCGGCCT CCCAGTGCGA GGACGAACCA
  CACGTTCAAA GTCCCGAAGT AGTGATTAGC TTCCCCCACG CCGCCATGTT GGCTCCAGCG
  CACGCCCGCC CGCGAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265595	MGP_WTSI_3_152059405	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253495993					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265595	MGP_WTSI_3_152059405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102078 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13949	CpG island 13949			1679 bp distal
Cpgi13950	CpG island 13950			within coordinates
Gm66519	predicted gene, 66519			1764 bp upstream
Rr587542	regulatory region 587542			958 bp distal
Rr587543	regulatory region 587543			299 bp distal
Rr587544	regulatory region 587544			519 bp distal
Rr587545	regulatory region 587545			459 bp distal
Rr587546	regulatory region 587546			370 bp distal
Rr587547	regulatory region 587547			within coordinates
Rr587548	regulatory region 587548			180 bp distal
Rr587549	regulatory region 587549			145 bp distal
Rr587550	regulatory region 587550			256 bp proximal
Rr587551	regulatory region 587551			264 bp proximal
Rr587552	regulatory region 587552			1256 bp proximal
Tssr32410	transcription start site region 32410			952 bp downstream
Tssr32411	transcription start site region 32411			382 bp downstream
Tssr32412	transcription start site region 32412			359 bp downstream
Tssr32413	transcription start site region 32413			47 bp downstream
Tssr32414	transcription start site region 32414			223 bp upstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant