rs253490335 SNP Detail

Summary

• ID
  rs253490335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTCAA ATGAGCAGTC
  CCTTCAAACC TAACTGCCAA ACCCTAACAG AGATCTAGCC ATCAGCATCT CTAGGATGTT
  TTAATTTGCT TTTTGTTGCT ATAATAAAAC ACTAACCAAA ACCGACTTAG TCAAAAAGGG
  TCTATTTGAA CTTAGAGCTC AGGAATGCAC CTTACTGGTT TGCTTCTCCT GGATTGCTCA
  R
  CTGCCTTTCT TCTACATCCT AGGTCCACAT GCCCAAGGAT GGCACCCACC ACAGTGGCCT
  GGGTCCTCCT GCAACAGCCA GCAATCAAGA GAATGCCCTA TAGGCATAGC TACTCCCCAG
  GTCCGCTACC ATGCTCTTTC TCCAGCTGTG TCTAGGTTTT CCTCAGGTTG ACAAAAACTT
  CACTAGCAGA ACCCACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369251560	MGP_WTSI_6_94235801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253490335					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251560	MGP_WTSI_6_94235801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	982 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1890 bp upstream
Rr634856	regulatory region 634856	1995 bp distal
Rr634857	regulatory region 634857	1777 bp distal
Rr634858	regulatory region 634858	1230 bp distal
Rr634859	regulatory region 634859	765 bp distal
Rr634860	regulatory region 634860	847 bp proximal
Rr634861	regulatory region 634861	1771 bp proximal
Tssr62175	transcription start site region 62175	1987 bp upstream
Tssr62176	transcription start site region 62176	1961 bp upstream
Tssr62177	transcription start site region 62177	1871 bp upstream