rs253485217 SNP Detail

Summary

• ID
  rs253485217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120017569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAGACT GTTGATTATA
  ATTTTCTCAA AGTTGCTTTA CCAGAGAAAA CTTTGTTTAT AACACAAAGA AACTTAATTA
  TACAGTGGTG GGTTTTTAAA AGACCAGTAA ATCACAGTTT TTTTTTTATT TATTGTATGT
  TTGTTTCTAT AAAAAGAAAT TAGGATATTT CTGTCCAGGT GGTTCTGAAA CAATTTTATC
  R
  TTGTTGCTTA TTCTTATTTA CTAAACCCTG CAACTTTGGT CACATGACAA TGGGCACAAC
  TTCCTTAATA TATATAATAT AGCCATGACC TGTCAACACA TCATTTCAAG CAAGAATACC
  TAGTCATTAT AAATAACCTA CTAATCATTG ACTTTAAAAA CCACACTTAT CCACATGACA
  ACTTTTCCTA CTTAGCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369858102	MGP_WTSI_6_119990626	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253485217					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369858102	MGP_WTSI_6_119990626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120017569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	1627 bp distal
Cpgi17917	CpG island 17917	575 bp distal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	1628 bp downstream
Rr399864	regulatory region 399864	703 bp downstream
Rr637760	regulatory region 637760	1776 bp distal
Rr637761	regulatory region 637761	379 bp distal
Rr637762	regulatory region 637762	802 bp distal
Tssr58518	transcription start site region 58518	682 bp downstream
Tssr62758	transcription start site region 62758	1972 bp upstream
Tssr62759	transcription start site region 62759	1909 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	1936 bp upstream