rs253463418 SNP Detail

Summary

• ID
  rs253463418
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36919220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGAGAT TCTCCTGCCT
  CAGCTTCTTG GTATAGGTTT GCAACAATTA CCCAACTTGA AATGTTTTCT TCCTTTCTCT
  CTCTTTCTTT CTTTCTCTCT CTTTTTTTTA AATTTTGGGT TCTAAAGAGA ATAGTAAAAG
  ACATGGATAA AAACGATTGA ATTCATTTAA TAGATATTTA TAAAGTACTA TATAGCAGAG
  W
  CCATTTTGAG CTTCTGGTAA AGAATGAAAT AGTAGAGGAA GAGAAAAGAA GTGCCTCTGT
  TTCTCTTGAA TTATTTGCTG TGTGAAGATT ATTCAGCAGG TTCTTACATT AGCTTTCAGC
  TTCTCTTCAT GATGCAGTTG GTGTACAATG AGTTGTGGCT GAGCTGGATA GCCATAGATC
  TGTGGATACT CTGTGGCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320705838	CHEV_3_36763993	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253463418					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36919220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bltp1	bridge-like lipid transfer protein family member 1			Intron
				Noncoding-Transcript-Variant
Cpgi13092	CpG island 13092			1480 bp distal
Rr575410	regulatory region 575410			1955 bp distal
Rr575411	regulatory region 575411			1001 bp distal
Tssr28878	transcription start site region 28878			1924 bp downstream
Tssr28879	transcription start site region 28879			1907 bp downstream
Tssr28880	transcription start site region 28880			1894 bp downstream
Tssr28881	transcription start site region 28881			1881 bp downstream