rs253457989 SNP Detail

Summary

• ID
  rs253457989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137713623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCGTCT GCTGAACCGC
  CCCCCCCCCC AGTTCTCTGG TTTTGGGGGC AGGGTCTCTT GCCCAGGCTA TATCCTCAGT
  TCACTGTGTA GCCCAGGAGG ACCTTGAACA GCTGAATTTC TTGCTCCCAC TTCCCAAGGG
  CTGGAATTAC AAGAGTGTGT GCCTATATCT AGCTTTGTTT CCTCTTGTTG TATGAGGCAG
  R
  GTGTCACGTG GCTGGCCTGG ACCACCATGA ACACCTGAGG CCCACCCTGA CCTCCTGATC
  CTCCTACCTC TGGCTCCCAG GTGCTGGTGG CTTTTCTTTC CTTTGGGCTC CCATCTCTAT
  ACTTTCGGAC TTAGATCTTG GGCCATCATG GCTCACACTG AGCATGCTCT TGGCAAAGGC
  TGGCATGTAT CGAAGAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
ss363429169	MGP_WTSI_4_137542227	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
rs253457989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363429169	MGP_WTSI_4_137542227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137713623 () rs orientation: forward

Symbol	Name	Function Class
Rr602809	regulatory region 602809	1723 bp distal
Rr602810	regulatory region 602810	278 bp distal