rs253444154 SNP Detail

Summary

• ID
  rs253444154
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38841997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTAAA ACGTTTCTTA
  AGGTATAAAT ATTATCTCAA AACATAAAGA GTATTATGTA TATATAAACC TTCTGTCATG
  ATACTACAGA ATACTAATTA ATTCTAGAAG TACTCTTCAT CTAGCTCTCT GTACACATTT
  TCAGGTTTGA GTCTGAAGCA GGTAACTAGC AGCAAAGTTT GTGTAGCCCA GATGCACTTA
  M
  TAGATTGCAG TCCTCAAACC CTTCTAAGAT CTGCTGAATA TGCTGTTTAA AATGTTTAAA
  GTTTCTACCA GTCCTCAAAA GTTGAGGTCT CCAAGGAGAT GATTGGATCC TTCAATGCGT
  AATCCACTGG CTTGTGGTAA AGCTAACCAT GGGGGGAAAC GGTTAATTGC CTCTTCTGCT
  GCCAGGTTTT GCACAAACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320723061	CHEV_3_38686770	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253444154					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38841997 () rs orientation: forward

Symbol	Name	Function Class
Rr575703	regulatory region 575703	988 bp proximal