rs253435998 SNP Detail

Summary

• ID
  rs253435998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53154607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTCAAAA ATCCGTAGAT ACCAAGGTCA
  GACACGATGT CCAGATGACC TAGTTTGATG ATGAAAGATG GTGGTGGTTT ATTTATAGCC
  CCACCCCCAA CTTATACTTA TTTGCTTTGA GCATGTGAAA TTACTTTAAA GAATGAAGGC
  M
  TTCATTCTTT AAAgggctga caagaagtgt cagtggataa gaacacctaa ggttctttca
  cagggcccag gttcagtcct cagctcggag ttctatgaga tccaatgccc ccttctggcc
  tctgttggca ttgcatgtgg tgcacatatg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767200	CHEV_3_53051108	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253435998					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53154607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576667	regulatory region 576667			1398 bp distal
Rr576668	regulatory region 576668			within coordinates
Rr576669	regulatory region 576669			102 bp proximal