rs253430311 SNP Detail

Summary

• ID
  rs253430311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104515443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTGGGGC CAAGGTCTAC GTTCCACTGG
  ATTCTCTAAG GTCATGGTAT TTACTGCTAG TTGAACAACT CAGTAGGTGC AAGTCAGTGG
  GGTGACTGGT TAGTAAATAA GATTAAGTTA GAAAACAGGT TAAACATAGG ACAAGTTCTA
  Y
  CTCGGGAGGT GTCTACTTCA GTCTATCTGT GTTAGAATGT TCTGGTCACA GCCACGTTGC
  TCATTGTGGG CTCTGAGCCT TTCAGACATT TGAAAACCAC AGCCCTAGAG CCTTGTAAAA
  TCCACAGTTC CCTGTAGCTT GAACATGATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320445332	CHEV_2_104525255	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253430311					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104515443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	222 bp proximal
Rr562107	regulatory region 562107	488 bp proximal
Rr562108	regulatory region 562108	1735 bp proximal
Tcp11l1	t-complex 11 like 1	Intron