rs253428104 SNP Detail

Summary

• ID
  rs253428104
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40595265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCTGTC CTCACAGGAA
  GAGGAAGAGG AGGAAGGCGA CTCCGACGCC GGGGCCAGCA GCTTGGGCTC CTACTCCTCA
  GCCAGCAGTG ACACGTAAGG CTCCTGGAGA CTGCGGGTCC CCTGCCCTTG CTCGCACGCA
  CGGGGAGCGG GGAGCAGTTC GCTGGCGGGC TTGCTCCGGT TTCTGGATAA GGGGTGGGGG
  T
  GGGGGTGGGG GTCCCTGCCT CTGGTGGGTT CTGTGTCTGT GAAGGATCAT TGTTGTGCTC
  TGTAGCACTG CCTTCTTACC TCACTGTGTC TTAGAGCATT CTTTAACATT TATTTTTATT
  ATTTTTTTAT TACATGTACC TGTGTGTCTT TGTGTGGGTA TCTGCACATA AGTGCAGGTG
  CCCACAGAGG CCAGAAGAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
ss357665727	MGP_WTSI_3_40440038	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
rs253428104					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357665727	MGP_WTSI_3_40440038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40595265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	14 bp distal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	205 bp downstream
Rr575837	regulatory region 575837	339 bp distal
Rr575838	regulatory region 575838	187 bp proximal
Tssr28955	transcription start site region 28955	326 bp downstream