rs253424061 SNP Detail

Summary

• ID
  rs253424061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:25645049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGCCT CACTCCTTCC
  TGGCTGACAT TCTCAGCCCA CTCCCTTTGA TCCCTTACGT GTTCTGGGGA CTCTTCAAGC
  CACTCCCATG CTCCTCTGCT GTGTCTTCCC TGCCATGTTT CAGTCTTTGT CTTCTCTTTC
  TCCACGCTGC CTCAGGTACC GACCTTAATG ACAGTCTCTC TCTCTCTCTC TCCCCCCCCC
  Y
  CTCTCTCTCT CTCTTTCTCT CTGTTTGCAG GTCCTCGGGA ACCCTATGGC CAATGCCAAC
  AACCCTATGA ATCCAGGTGG CAACCCCATG GCATCAGGCA TGAGCACCAG CAACCCCGGC
  ATCAACTCCC CACAGTTCGC AGGGCAACAG CAACAGTTCT CCACCAAAGC TGGCCCTGCA
  CAGCCCTATA TCCAGCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
ss390583556	MGP_WTSI_14_26464111	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
rs253424061					SNP	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390583556	MGP_WTSI_14_26464111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:25645049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr489197	regulatory region 489197			1463 bp proximal
Rr489198	regulatory region 489198			1915 bp proximal
Tssr124634	transcription start site region 124634			90 bp upstream
Zmiz1	zinc finger, MIZ-type containing 1			Intron
				Noncoding-Transcript-Variant