rs253411579 SNP Detail

Summary

• ID
  rs253411579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94261597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG GCCAGCCCCC TTTGGCTTCT
  R
  GGAGAGCCGA GAAACCTAAG CACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321866897	CHEV_6_94234610	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253411579					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94261597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	within coordinates
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	699 bp upstream
Rr634855	regulatory region 634855	1617 bp distal
Rr634856	regulatory region 634856	804 bp distal
Rr634857	regulatory region 634857	586 bp distal
Rr634858	regulatory region 634858	39 bp distal
Rr634859	regulatory region 634859	within coordinates
Tssr62172	transcription start site region 62172	1075 bp upstream
Tssr62173	transcription start site region 62173	1014 bp upstream
Tssr62174	transcription start site region 62174	825 bp upstream
Tssr62175	transcription start site region 62175	796 bp upstream
Tssr62176	transcription start site region 62176	770 bp upstream
Tssr62177	transcription start site region 62177	680 bp upstream