rs253371568 SNP Detail

Summary

• ID
  rs253371568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATTAG AATATCATCC
  GTGCCTCATG GGAGGCTCTA AAGCAGAGGC TCTCGACTTT GCTGATGCTA CAACCCTTTA
  ATTCAGTCCC TCACCTTCTG GCGACCCGCC TTCCACCATA AAATTACATT GTTGCTACTT
  CATAACTGTA ATTTTGATAT TATGATTCGG AATATAAATA CTATATGATG TGTGGCCCCC
  S
  GGGGGGGGCA GTCACCAACC CCAGGGGGTC GCAGCCCACA GGTTGACAAC TACTCAGTGG
  AGTCAGTGGG CTGTCAGCCT CAGGTGAGGA TGGCTGAGTC CCTTCATGGA GCTGTCTATC
  CTCCAGGACC TAGACTCAAG AGATACATGG GGTGTGTGGT CTTTTGTGAC CTGGTCCTAA
  CTTGCTTTTC TTCCAAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361332775	MGP_WTSI_4_43971820	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253371568					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361332775	MGP_WTSI_4_43971820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	518 bp distal
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	1561 bp downstream
Rr398233	regulatory region 398233	582 bp upstream
Rr591111	regulatory region 591111	1246 bp distal
Rr591112	regulatory region 591112	1572 bp distal
Rr591113	regulatory region 591113	436 bp distal
Rr591114	regulatory region 591114	123 bp distal
Rr591115	regulatory region 591115	567 bp proximal
Rr591116	regulatory region 591116	850 bp proximal
Tssr37004	transcription start site region 37004	1452 bp downstream
Tssr37005	transcription start site region 37005	1421 bp downstream
Tssr37006	transcription start site region 37006	1213 bp downstream